[BEGIN PAUP;
	default lscores longfmt=yes;
	Dset distance=LogDet subst=all;
    NJ showtree=no;

End;

BEGIN PAUP;
Set criterion=like;

lscores  1/ nst=1  base=equal  rates=equal  pinv=0
scorefile=score_file replace;
lset   nst=1  base=equal  rates=equal  pinv=0;
savetrees file=tree_file.tre replace brlens=yes root=no;


lscores  1/ nst=1  base=equal  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=1  base=equal  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=1  base=equal  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=1  base=equal  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=1  base=equal  rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=1  base=equal  rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=1  base=est  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=1  base=previous  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=1  base=est  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=1  base=previous  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=1  base=est  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=1  base=previous  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=1  base=est  rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=1  base=previous  rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 



lscores  1/ nst=2  base=equal  tratio=est  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=2  base=equal  tratio=previous  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=2  base=equal  tratio=est  rates=equal  pin=est
scorefile=score_file  append;
lset   nst=2  base=equal  tratio=previous  rates=equal  pin=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=2  base=equal  tratio=est  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=2  base=equal  tratio=previous  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=2  base=equal  tratio=est  rates=gamma  shape=est pinv=est
scorefile=score_file  append;
lset   nst=2  base=equal  tratio=previous  rates=gamma  shape=previous pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 
 
           
lscores  1/ nst=2  base=est  tratio=est  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=2  base=previous  tratio=previous  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=2  base=est  tratio=est  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=2  base=previous  tratio=previous  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=2  base=est  tratio=est  rates=gamma  shape=est  pinv=0  
scorefile=score_file  append;
lset   nst=2  base=previous  tratio=previous  rates=gamma  shape=previous  pinv=0  ;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=2  base=est  tratio=est  rates=gamma  shape=est  pinv=est  
scorefile=score_file  append;
lset   nst=2  base=previous  tratio=previous  rates=gamma  shape=previous  pinv=previous  ;
savetrees file = tree_file.tre append brlens=yes root=no; 

                           
lscores  1/ nst=6  base=equal  rmat=est  rclass=(a b a a e a)  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass=(a b a a e a)  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass=(a b a a e a) rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass=(a b a a e a) rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal rmat=est  rclass=(a b a a e a) rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal rmat=previous  rclass=(a b a a e a) rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est rclass=(a b a a e a) rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous rclass=(a b a a e a) rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b a a e a) rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b a a e a) rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b a a e a) rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b a a e a) rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b a a e a) rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b a a e a) rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b a a e a) rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b a a e a) rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no;              
						  
lscores  1/ nst=6  base=equal  rmat=est  rclass=(a b c c b a)  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass=(a b c c b a)  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass=(a b c c b a)  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass=(a b c c b a)  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal rmat=est  rclass=(a b c c b a)  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal rmat=previous  rclass=(a b c c b a)  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est rclass=(a b c c b a)  rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous rclass=(a b c c b a)  rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 

 
lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c c b a)  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c c b a)  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c c b a)  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c c b a)  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c c b a)  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c c b a)  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 

 
lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c c b a)  rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c c b a)  rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass=(a b c c e a)  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass=(a b c c e a)  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass=(a b c c e a)  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass=(a b c c e a)  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal rmat=est  rclass=(a b c c e a)  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal rmat=previous  rclass=(a b c c e a)  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est rclass=(a b c c e a)  rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous rclass=(a b c c e a)  rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c c e a)  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c c e a)  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c c e a)  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c c e a)  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c c e a)  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c c e a)  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmatrix=est  rclass=(a b c c e a)  rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmatrix=previous  rclass=(a b c c e a)  rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass=(a b c d b e)  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass=(a b c d b e)  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass=(a b c d b e)  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass=(a b c d b e)  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 

lscores  1/ nst=6  base=equal rmat=est  rclass=(a b c d b e)  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal rmat=previous  rclass=(a b c d b e)  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 

 
lscores  1/ nst=6  base=equal  rmat=est rclass=(a b c d b e)  rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous rclass=(a b c d b e)  rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c d b e) rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c d b e) rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c d b e)  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c d b e)  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c d b e)  rates=gamma  shape=est  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c d b e)  rates=gamma  shape=previous  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass=(a b c d b e)  rates=gamma  shape=est  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass=(a b c d b e)  rates=gamma  shape=previous  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass= (a b c d e f)  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass= (a b c d e f)  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass= (a b c d e f)  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass= (a b c d e f)  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 

 
lscores  1/ nst=6  base=equal  rmat=est  rclass= (a b c d e f)  rates=gamma  shape=est pinv=0  
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass= (a b c d e f)  rates=gamma  shape=previous pinv=0  ;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=equal  rmat=est  rclass= (a b c d e f)  rates=gamma  shape=est pinv=est  
scorefile=score_file  append;
lset   nst=6  base=equal  rmat=previous  rclass= (a b c d e f)  rates=gamma  shape=previous pinv=previous  ;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass= (a b c d e f)  rates=equal  pinv=0
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass= (a b c d e f)  rates=equal  pinv=0;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass= (a b c d e f)  rates=equal  pinv=est
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass= (a b c d e f)  rates=equal  pinv=previous;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores  1/ nst=6  base=est  rmat=est  rclass= (a b c d e f)  rates=gamma  shape=est pinv=0  
scorefile=score_file  append;
lset   nst=6  base=previous  rmat=previous  rclass= (a b c d e f)  rates=gamma  shape=previous pinv=0  ;
savetrees file = tree_file.tre append brlens=yes root=no; 


lscores 1/ nst=6  base=est  rmat=est  rclass= (a b c d e f)  rates=gamma  shape=est pinv=est  
scorefile=score_file  append;
lset  nst=6  base=previous  rmat=previous  rclass= (a b c d e f)  rates=gamma  shape=previous pinv=previous  ;
savetrees file = tree_file.tre append brlens=yes root=no; 

quit;

END;]